Bio-Informatics Tools (Sequence analysis)

• BCM Search Launcher
• Block-Maker (Design Blocks and a Cobbler sequence from known sequences)
• Decypher (TimeLogic Server) (Use this if the Stanford Server is down)
• DoubleTwist
• eMotif and eBlocks
• End sequence info for mouse BAC clones (TIGR...input ID# of BAC)
• ExPasy - Protein Analysis Tools (THIS PAGE HAS A TON OF RESOURCES !!!)
• GENSCAN (MIT)
• InterPro (Get a FULL profile for your protein - Checks BLOCKS, PRINTS, PRODOMO, DOMO, and PFAM databases)
• MarFinder (Find putative matrix attachment sites in genomic sequences)
• Pipmaker
• ProSite
• PSORT
• Repeatmasker (Institute for Systems Biology)
• Swiss-Prot
• Stanford's SeqWeb (GCG package available thru Stanford's PMGM web interface)
• Transport Protein Database and Tools
• Whitehead Institute (MIT) (Genomic Markers etc.)

Journal Resources

• Cell
• Development
• Developmental Dynamics
• Genes & Development
• Highwire Press
• Nature
• Science
• Socrates (Stanford Online Catalog)
• Stanford's online BIOLOGY JOURNALS
• SciSearch (Has a citation index - complete bibliographies of each reference and lists of papers that cited the reference)

Model Organisms

Mouse

• UCSC Mouse Genome Browser
• Embryo Images on-line
• The Edinburgh Mouse Atlas Project
• µMRI Atlas of Mouse Development
• Mouse Genome Informatics
• Jackson Labs
• Mouse Genetics - Lee Silver
• The Trans-NIH mouse initiative (Has links to various stuff, including the mouse BAC sequencing program)
• The Whole Mouse catalog (A nice site with links to lots of mouse information/resources/protocols)
• The Visible Mouse (UC Davis with NMR images, histology series in quicktime format)

Stickleback

• UCSC Stickleback Genome Browser
• Broad Institute Stickleback Genome Information
• Dolph Schluter

Other

• UCSC Pufferfish Genome Browser
• Pufferfish genome

Protocols

• Protocols-online

Skeletal Biology and Anatomy

• The "ONLINE SKELETON"
• Human Osteology site (Cool 3D computer-generated reference images of the human skeleton)

Stanford Sites

• CMGM software resources
• SUPD (stanford's postdoc organization)